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Digex Genome Browser
A free genomic web browser for bioinformaticians who want to work with their own data sets.
A tool for analyzing genomic data formats.
An open-source product.
DGB is designed for researchers who want to work with their own data sets and integrate them with popular public resources (NCBI, Ensembl, UniProt, etc.). The built-in DGB genomic browser can work with a variety of data types in different commonly used genomic data formats, including BAM/CRAM, GFF/GTF, VCF (including structural), as well as bigwig and bed/seg files.
DGB supports real-time interaction with genome resolution of any scale and simultaneous display of data from multiple genomic regions. DGB also has a built-in plugin for viewing protein 3D structures. The browser with its own API can be integrated into data processing pipelines. DGB supports Chrome, Safari, Firefox, and other web browsers on all leading operating systems (Windows, Mac, Linux), and data processing is performed on the server side.
An open-source product.
DGB is designed for researchers who want to work with their own data sets and integrate them with popular public resources (NCBI, Ensembl, UniProt, etc.). The built-in DGB genomic browser can work with a variety of data types in different commonly used genomic data formats, including BAM/CRAM, GFF/GTF, VCF (including structural), as well as bigwig and bed/seg files.
DGB supports real-time interaction with genome resolution of any scale and simultaneous display of data from multiple genomic regions. DGB also has a built-in plugin for viewing protein 3D structures. The browser with its own API can be integrated into data processing pipelines. DGB supports Chrome, Safari, Firefox, and other web browsers on all leading operating systems (Windows, Mac, Linux), and data processing is performed on the server side.
Digex Genome Browser (DGB)
DGB Integration
Features
Alignment visualization
- Support for BAM/CRAM format
- Interactive visualization up to 150 KB
- Sorting, highlighting, and grouping of reads
- Loose constraints reads
- Coverage visualization
Variability visualization
- Fast filtering/search, viewing of grouped variabilities and variabilities in a stack
- Access to detailed variability information on request
- Links to external databases (dbSNP, etc.)
- Viewing the impact of variability on protein domains
Structural variability visualization (long insertions and deletions, inversions, breakpoints)
- Detailed variability information
- Display of recombinant proteins with domain/exon structure
- Visualization of DNA rearrangement and resulting hybrid proteins/domains/exons
- Integration with UniProt database and display of protein domain structure on rearrangement diagram
- Split view for simultaneous viewing of multiple genomic regions
RNA sequencing visualization
- Split read and splicing boundary modes
- Exon-only display mode (to hide introns)
- Integration with ENSEMBL, UniPROT, etc.
- Integration with REST API (e.g. in pipelines)
Alignment visualization
- Support for BAM/CRAM format
- Interactive visualization up to 150 KB
- Sorting, highlighting, and grouping of reads
- Loose constraints reads
- Coverage visualization
Variability visualization
- Fast filtering/search, viewing of grouped variabilities and variabilities in a stack
- Access to detailed variability information on request
- Links to external databases (dbSNP, etc.)
- Viewing the impact of variability on protein domains
Structural variability visualization (long insertions and deletions, inversions, breakpoints)
- Detailed variability information
- Display of recombinant proteins with domain/exon structure
- Visualization of DNA rearrangement and resulting hybrid proteins/domains/exons
- Integration with UniProt database and display of protein domain structure on rearrangement diagram
- Split view for simultaneous viewing of multiple genomic regions
RNA sequencing visualization
- Split read and splicing boundary modes
- Exon-only display mode (to hide introns)
- Integration with ENSEMBL, UniPROT, etc.
- Integration with REST API (e.g. in pipelines)
Advantages of DGB
More efficient analysis
You will appreciate the rich intuitive interface and the ability to quickly visualize data
Ability to start working quickly and for free
Under the MIT license, you have access to a fast integrable tool for quickly obtaining results
Full cloud and web interface support
Ability to use as a cloud solution without installation on the device
Collaboration optimization
Synergistic effect of collaboration and research results sharing
Supplementing analysis with external data
Convenient access to public scientific data for analysis
More efficient analysis
You will appreciate the rich intuitive interface and the ability to quickly visualize data
Ability to start working quickly and for free
Under the MIT license, you have access to a fast integrable tool for quickly obtaining results
Full cloud and web interface support
Ability to use as a cloud solution without installation on the device
Collaboration optimization
Synergistic effect of collaboration and research results sharing
Supplementing analysis with external data
Convenient access to public scientific data for analysis
